snakemake, singularity, and HPC

Posted on Mon 01 August 2022 in posts • Tagged with hpc, python, reproducibility

This is a bit of a sequel to my post last May about using conda environments with snakemake on the HPC. That solution worked for me, but was hacky and limited. This post will describe a different solution, which uses a singularity container containing a conda environment that can be …

Continue reading